projects/genomics/vmh/index

Pairwise differential and functional enrichment analyses

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Venn diagram of differential genes

Venn Diagram

Top Genes

Here are some materials for the draft

Volcano

Heat

Venn diagram of WT16 UP Genes (WT and KO)

Venn Diagram

Venn diagram of WT16 DOWN Genes (WT and KO)

Venn Diagram2

Venn diagram of WT UP Genes (ZT4 and ZT16)

Venn Diagram

Venn diagram of KO UP Genes (ZT4 and ZT16)

Venn Diagram

Enrichment of TF (MotifMap, Chipseq) and RBP

Enrichment of pathways (CPDB, PathwayCommons)

WT Crossing (4), Enriched Pathways

WT Crossing (4), Enriched TFs/RBPs

KO Crossing (10), Enriched Pathways

KO Crossing (10), Enriched TFs/RBPs

List of differential genes, GO and other key terms and differential TFs

List of Enriched DAVID Clusters

TFBS Enrichment table of upstream and downstream.

Chipseq Enrichment table of upstream regulators.