Basic Statistics
Measure | Value |
---|---|
Filename | 26687_ID1144_7_S54_L006_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3803698 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 4770 | 0.12540427762666753 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGTGC | 2785 | 0.0 | 35.923523 | 1 |
TCCGATC | 2660 | 0.0 | 25.371103 | 6 |
TTCCGAT | 2700 | 0.0 | 25.029861 | 5 |
TCTTCCG | 4085 | 0.0 | 24.414242 | 8 |
CCGATCT | 2905 | 0.0 | 23.418825 | 7 |
CTTCCGA | 4360 | 0.0 | 22.609314 | 9 |
CGATCTA | 680 | 0.0 | 19.498812 | 8 |
GTGCTCT | 5180 | 0.0 | 19.402416 | 4 |
GTGTGCT | 5190 | 0.0 | 19.253738 | 2 |
CGTTGAT | 740 | 0.0 | 18.755886 | 1 |
TGTGCTC | 5525 | 0.0 | 18.086317 | 3 |
CGATCTC | 1455 | 0.0 | 17.43327 | 8 |
TGCTCTT | 6665 | 0.0 | 15.339438 | 5 |
CGATCTT | 1035 | 0.0 | 13.924796 | 8 |
GCTCTTC | 7770 | 0.0 | 12.991287 | 6 |
CGTAACG | 160 | 0.0022388431 | 12.610976 | 40-41 |
CGATCTG | 1505 | 0.0 | 12.257522 | 8 |
TCGCTAA | 815 | 0.0 | 10.805663 | 110-111 |
GCGGAAT | 505 | 5.33333E-4 | 10.294079 | 3 |
ATATCGG | 980 | 0.0 | 10.292099 | 28-29 |