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26687_ID1144_7_S15_L004_R1_001.fastq.gz FastQC Report
FastQCFastQC Report
Sat 1 Dec 2018
26687_ID1144_7_S15_L004_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename26687_ID1144_7_S15_L004_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17645151
Sequences flagged as poor quality0
Sequence length125
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN236140.13382713471820107No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTGC125500.033.9873731
TCTTCCG179050.023.6546658
TCCGATC116700.022.6138536
TTCCGAT120400.021.7567255
CTTCCGA203250.020.5250539
CCGATCT128700.020.4928237
GTGTGCT235400.018.4973852
CGATCTA32950.018.2118689
GTGCTCT248300.017.30354
CGTTGAT29900.017.2271181
TGTGCTC262400.016.4618473
CGATCTC62900.014.4944428
TGCTCTT307450.014.1625785
GCTCTTC352500.012.434036
CGATCTG70200.011.8364238
TAATCGT15400.010.146981
CGATCTT47100.09.1883058
CGGAATT64850.08.7385212
ATATCGG40250.08.59947628-29
GTTGATT76850.08.5779362
Produced by FastQC (version 0.11.5)