Basic Statistics
Measure | Value |
---|---|
Filename | 26684_ID1144_4_S51_L006_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3613292 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGTGC | 3065 | 0.0 | 46.651657 | 1 |
TCTTCCG | 4570 | 0.0 | 31.178207 | 8 |
CTTCCGA | 4855 | 0.0 | 28.510893 | 9 |
GTGTGCT | 5205 | 0.0 | 27.328337 | 2 |
TCCGATC | 3245 | 0.0 | 25.709538 | 7 |
GTGCTCT | 5630 | 0.0 | 25.059113 | 4 |
TTCCGAT | 3320 | 0.0 | 24.969118 | 6 |
CGATCTA | 790 | 0.0 | 24.926079 | 9 |
TGTGCTC | 5725 | 0.0 | 24.7447 | 3 |
CCGATCT | 3460 | 0.0 | 24.440437 | 8 |
TGCTCTT | 6955 | 0.0 | 20.118135 | 5 |
GCTCTTC | 8185 | 0.0 | 17.352123 | 6 |
CGATCTC | 1515 | 0.0 | 17.204105 | 8 |
CGATCTG | 1690 | 0.0 | 15.419519 | 12-13 |
TAATCGT | 375 | 3.140718E-5 | 13.949984 | 1 |
TCGTTGA | 460 | 1.0081039E-6 | 13.883618 | 4 |
CGATCTT | 1095 | 0.0 | 13.751858 | 9 |
CTCTTCC | 11965 | 0.0 | 12.056829 | 7 |
GCGGAAT | 505 | 5.0866156E-4 | 10.347107 | 4 |
CCGAAAT | 510 | 5.5117154E-4 | 10.25734 | 1 |