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26683_ID1144_3_S72_L008_R1_001.fastq.gz FastQC Report
FastQCFastQC Report
Sat 1 Dec 2018
26683_ID1144_3_S72_L008_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename26683_ID1144_3_S72_L008_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4051085
Sequences flagged as poor quality0
Sequence length125
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN64310.15874759478016381No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTGC35800.048.923751
TCTTCCG45800.037.996328
CTTCCGA50500.034.3446969
GTGTGCT60400.029.3495352
GTGCTCT61750.028.80174
TGTGCTC64750.027.6461983
TCCGATC32000.027.27723910-11
TTCCGAT32850.026.04352810-11
CGATCTA8000.024.56697312-13
CCGATCT34950.024.47807112-13
TGCTCTT77400.023.0529485
CGTTGAT6300.021.1730371
GCTCTTC87350.020.3339716
CGATCTC15200.017.30336412-13
AAACGCG3351.1382335E-515.532398
CGATCTG19050.015.3235412-13
CTCTTCC135100.013.5671137
ACGCGGT3253.4063487E-711.56121410-11
CGATCTT12350.010.99926412-13
CGGAATT14050.010.3081432
Produced by FastQC (version 0.11.5)