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26683_ID1144_3_S11_L004_R1_001.fastq.gz FastQC Report
FastQCFastQC Report
Sat 1 Dec 2018
26683_ID1144_3_S11_L004_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename26683_ID1144_3_S11_L004_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18034558
Sequences flagged as poor quality0
Sequence length125
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN279690.15508558623948532No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTGC161750.051.9436721
TCTTCCG222650.037.3843848
CTTCCGA243550.033.70029
GTGTGCT271450.031.1392382
GTGCTCT282400.029.8291874
TGTGCTC298850.028.2454993
TCCGATC158500.025.87140710-11
TTCCGAT161250.025.5199210-11
TGCTCTT346700.024.1965795
CCGATCT172600.023.79010212-13
CGATCTA44250.023.01887512-13
CGTTGAT29950.021.5196191
GCTCTTC405350.020.7927286
CGATCTC77950.015.99984812-13
CGATCTG83700.015.52299812-13
CTCTTCC610500.014.0157137
TAATCGT17950.012.615621
CGATCTT49200.012.17474812-13
TCGTTGA23200.010.5026974
TAACGCT18500.010.4792630-31
Produced by FastQC (version 0.11.5)