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26682_ID1144_2_S50_L006_R1_001.fastq.gz FastQC Report
FastQCFastQC Report
Sat 1 Dec 2018
26682_ID1144_2_S50_L006_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename26682_ID1144_2_S50_L006_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5597771
Sequences flagged as poor quality0
Sequence length125
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTGC37450.027.9823551
CGTTGAT9600.026.6836361
TCTTCCG47150.021.5319488
CTTCCGA52750.019.3557249
TCCGATC26450.019.314316
TTCCGAT28100.019.0375695
CGATCTA8350.016.674468
CCGATCT31350.016.4716727
GTGTGCT72000.014.53683952
GTGCTCT72000.014.37531954
TGTGCTC78350.013.2102493
CGATCTC16850.012.90876112-13
CGGAATT21300.012.0116622
TGCTCTT89700.011.5387185
TTGATTA22400.011.4218033
ATATCGG12750.011.37239628-29
CTAGATA13200.011.0127582
CGTTAAC3800.007508250410.7245241
CCGGAAT26700.010.4663091
GCTCTTC100550.010.2191186
Produced by FastQC (version 0.11.5)