Basic Statistics
Measure | Value |
---|---|
Filename | 26682_ID1144_2_S50_L006-R2_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5597771 |
Sequences flagged as poor quality | 0 |
Sequence length | 125 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTGGGCAAGTGAGCTTTTTAGTTTGTGTCGGAAGCCTGTAATTACGGCTC | 6549 | 0.11699299596214278 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGTGC | 3995 | 0.0 | 32.32662 | 1 |
ATTACGG | 2130 | 0.0 | 25.99498 | 40-41 |
CGGAATA | 2200 | 0.0 | 24.325514 | 4 |
GCGGAAT | 2290 | 0.0 | 23.117544 | 3 |
TCCGATC | 3700 | 0.0 | 23.048027 | 7 |
CCCCCGT | 1695 | 0.0 | 22.99478 | 1 |
CCGATCT | 3875 | 0.0 | 21.405825 | 8 |
TTACGGC | 2110 | 0.0 | 21.02011 | 42-43 |
TCTTCCG | 6325 | 0.0 | 20.267462 | 8 |
TTCCGAT | 4230 | 0.0 | 20.172121 | 6 |
CGTAACG | 615 | 0.0 | 19.797478 | 40-41 |
CGGGGGA | 3880 | 0.0 | 19.34114 | 1 |
GTCGGAA | 3025 | 0.0 | 18.69191 | 26-27 |
CTTCCGA | 6920 | 0.0 | 18.189196 | 9 |
CGATCTA | 645 | 0.0 | 17.986137 | 8 |
GGGGGGT | 9270 | 0.0 | 17.759504 | 1 |
CTATACT | 3145 | 0.0 | 17.74392 | 68-69 |
GTGTGCT | 7390 | 0.0 | 17.711937 | 2 |
GTGCTCT | 7690 | 0.0 | 17.39796 | 4 |
GGCAAGT | 5320 | 0.0 | 17.385307 | 4 |