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26682_ID1144_2_S10_L004_R1_001.fastq.gz FastQC Report
FastQCFastQC Report
Sat 1 Dec 2018
26682_ID1144_2_S10_L004_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename26682_ID1144_2_S10_L004_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17064085
Sequences flagged as poor quality0
Sequence length125
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTGTGC105550.029.7769091
CGTTGAT27450.020.9911861
TCTTCCG150000.020.772988
TCCGATC87100.019.7230787
CTTCCGA166300.019.259499
TTCCGAT91950.018.8209276
CCGATCT98550.017.545898
CGATCTA26450.017.1106629
GTGTGCT217800.014.3649612
GTGCTCT227400.013.9631124
TGTGCTC237600.013.0944553
CTAGATA45350.012.9516212
TAATCGT15950.012.7717821
ACTAGAT43250.011.9769981
TGCTCTT277200.011.5594845
CGATCTC54500.011.2856128
ATATCGG38600.010.9701828-29
TCGTTGA21000.010.800044
TAGATAC52200.010.2493733
GCTCTTC314350.010.16074856
Produced by FastQC (version 0.11.5)