This section provides the identifiers and notations used to report the analysis results on this website.
It also provides a description of some parts of the analysis and some comments that may help understand the results.

Analysis Procedure

• Detecting Oscillation
  Detecting oscillating transcripts (P-Value, Q-Value, Period, Amplitude, Lag) was done via:
  BioCycle
  
• Functional Analysis
  Functional Analysis was performed using GO Terms
  Please click on links under tab for detailed reports of GO Terms for oscillating transcripts.
  
• TFBS Enrichment
  TFBS Enrichment was performed using MotifMap and CHiPSeq experiments obtained from ENCODE
  Please use table to see specific experiment identifiers.
  
• Visualization
  Please visit Circadiomics for transcript visualization.
  Select Transcriptome
  Datasets:
  mouse_scn_control
  mouse_scn_high_fat
  

Venn Diagrams

Circadian Transcripts

Phase Analysis

Contol

High Fat

Both in Control

Both in High Fat

Radar Graphs

Alone

Both

Heatmaps

Circadian in Control-Alone

Circadian in High_Fat-Alone

Circadian in BOTH Conditions

Data Download

• Dataset: Table
• Dataset: Table
• Genes: Table
• Genes: Table
• TFs: Table
• TFs: Table
• (BOTH) Genes: Table
• (BOTH) TFs: Table
  

Data Visualization

Pathway Enrichment

• Pathway Enrichment Condition1: Pathway Analysis
  
• Pathway Enrichment Condtion2: Pathway Analysis
  
• Pathway Enrichment (BOTH): Pathway Analysis

Data Download

Pathway Enrichment

• Pathway Enrichment EXCEL: Excel Table
  
• Pathway Enrichment EXCEL: Excel Table
  
• Pathway Enrichment (BOTH) EXCEL: Excel Table

MotifMap TFBS, CHiPSeq, and RBP Enrichment

• Enriched Report Condition1
• Enriched Report Condition2
• Enriched Report Both

Data Download

• TFBS Condition1 Excel
• TFBS Condition2 Excel
• TFBS (Both) Excel

In Phase Upstream TFs

Data Download

• Control: Table
• High Fat: Table
• Both: Table

Metabolome Transcriptome Link

Control

High Fat

Protein Enrichment

Control

High Fat