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Mouse Liver Pairwise Comparison - Analysis Results
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This section provides the identifiers and notations used to report the analysis results on this website.
It also provides a description of some parts of the analysis and some comments that may help understand the results.

Experimental Design

Analysis Procedure

  • RNA Seq Analysis
    Read mapping, transcript and isoform detection,and differential expression were done using the Illumina Pipeline
  • Detecting Oscillation
    Detecting oscillating transcripts (P-Value, Q-Value, Period, Amplitude, Lag) was done via:
    BioCycle
  • Functional Analysis
    Functional Analysis was performed using GO Terms
    Please click on links under tab for detailed reports of GO Terms for oscillating transcripts.
  • TFBS Enrichment
    TFBS Enrichment was performed using MotifMap and CHiPSeq experiments obtained from ENCODE
    Please use table to see specific experiment identifiers.
  • Visualization
    Please visit Circadiomics for transcript visualization.
    Select Transcriptome

Venn Diagrams


Volcano Plot


Heatmaps


Data Download

    Raw FPKM Table for Muscle: Table
    Raw FPKM Table for Liver: Table

Data Visualization

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Pathway Enrichment

Pathway Data Download

MotifMap TFBS, CHiPSeq, and RBP Enrichment

  • Factor Enrichment in Condition1

    • factors

  • Factor Enrichment in Condition2

    • factors

Factor Data Download

Downsteam Analysis





Data Download

  • Protein-Metabolite Interaction (in-phase) : Table
  • Protein-Metabolite Interaction (in-phase, highest-scored (80 percentile)) : Table
  • Protein Functional Enrichment (in-phase): Table

  • Protein-Metabolite Interaction (lag term dropped) : Table
  • Protein-Metabolite Interaction (lag term dropped, highest-scored (80 percentile)) : Table
  • Protein Functional Enrichment (lag term dropped): Table