Basic Statistics
Measure | Value |
---|---|
Filename | 63285_TTAGGC_S40_L005_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12119112 |
Sequences flagged as poor quality | 0 |
Sequence length | 52 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCCGT | 34873 | 0.2877521059298734 | TruSeq Adapter, Index 3 (100% over 52bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTATG | 5110 | 0.0 | 38.933685 | 42 |
TATGCCG | 5120 | 0.0 | 38.588108 | 45 |
CGTATGC | 5165 | 0.0 | 38.25144 | 43 |
CTCGTAT | 5400 | 0.0 | 36.715023 | 41 |
ACACGTC | 5745 | 0.0 | 36.308487 | 12 |
TCTCGTA | 5730 | 0.0 | 34.72082 | 40 |
ATGCCGT | 5725 | 0.0 | 34.59002 | 46 |
ATCGGAA | 5690 | 0.0 | 34.13154 | 1 |
CGTCTGA | 6035 | 0.0 | 33.95445 | 15 |
ATCTCGT | 5900 | 0.0 | 33.682102 | 39 |
ACGTCTG | 6090 | 0.0 | 33.6478 | 14 |
CACGTCT | 6280 | 0.0 | 32.99601 | 13 |
CACACGT | 6340 | 0.0 | 32.93726 | 11 |
TCGGAAG | 5985 | 0.0 | 32.550293 | 2 |
CTTAGGC | 6265 | 0.0 | 32.345097 | 32 |
ACTTAGG | 6300 | 0.0 | 31.945679 | 31 |
CATCTCG | 6225 | 0.0 | 31.813803 | 38 |
GTATGCC | 6315 | 0.0 | 31.576855 | 44 |
GCACACG | 6870 | 0.0 | 30.764484 | 10 |
CACTTAG | 6625 | 0.0 | 30.309471 | 30 |